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| == '''STEM Documentation''' == | | == '''STEM Documentation''' == |
| | | |
− | {| border="1" cellpadding="5" cellspacing="0" align="center" | + | {| style="width: 90%" border="1" cellpadding="5" cellspacing="0" align="center" |
| |+ | | |+ |
| |- | | |- |
− | ! style="background: #efefef;" | | + | ! style="width: 45%; background: #cceeff;" | |
| === Introductory Resources === | | === Introductory Resources === |
− | ! colspan="2" style="background: #ffdead;" | | + | ! colspan="2" style="width: 45%; background: #cceeff;" | |
| === Tutorials === | | === Tutorials === |
| |- | | |- |
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| #[[STEM Model Creator]] for users (''beta'') | | #[[STEM Model Creator]] for users (''beta'') |
| |- | | |- |
− | ! style="background: #efefef;" | | + | ! style="background: #cceeff;" | |
| === Advanced Guides === | | === Advanced Guides === |
− | ! colspan="2" style="background: #ffdead;" | | + | ! colspan="2" style="background: #cceeff;" | |
| === Epidemiological Modeling === | | === Epidemiological Modeling === |
| |- | | |- |
| | | | | |
| <!-- middle left (ADVANCED GUIDES GOES HERE) --> | | <!-- middle left (ADVANCED GUIDES GOES HERE) --> |
− | ====Developers====
| |
| *[[Welcome STEM Developers]] | | *[[Welcome STEM Developers]] |
| *[[STEM Eclipse Setup|Setting up a STEM Development Environment]] | | *[[STEM Eclipse Setup|Setting up a STEM Development Environment]] |
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| *[[Creating a Customized Color Provider|Customizing Colors]] | | *[[Creating a Customized Color Provider|Customizing Colors]] |
| *[[STEM Performance Tips |General tips when writing performance critical code]] | | *[[STEM Performance Tips |General tips when writing performance critical code]] |
− | | + | *Working with Graphs |
− | ====Working with Graphs====
| + | |
| #[[Composing a Graph]] | | #[[Composing a Graph]] |
| #[[Creating a new Graph|Creating a Custom Graph]] (''new'') ''seasonal migration'' | | #[[Creating a new Graph|Creating a Custom Graph]] (''new'') ''seasonal migration'' |
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| #[[Importing a Pajek Graph|Importing a Graph from a Pajek File]] | | #[[Importing a Pajek Graph|Importing a Graph from a Pajek File]] |
| #[[Importing an Esri Shapefile|Importing a Graph from an Esri Shapefile]] | | #[[Importing an Esri Shapefile|Importing a Graph from an Esri Shapefile]] |
− | | + | *[[STEM_Solvers|Available STEM Solvers]] |
− | ====Modeling New Diseases====
| + | |
− | #[[STEM Model Creator|Using the '''''New!!''''' STEM Model Creator tool]] (''beta'')
| + | |
− | #[[STEM Model Generator]] tool (for Developers)
| + | |
− | #*[[STEM_Model_Generator/Install|Model Generator Installation]]
| + | |
− | #[[Creating a new Disease Model Plug-in|Manual Model Plug-in generation]]
| + | |
− | #[[Creating a new disease label|Manual Disease Label creation]]
| + | |
− | | + | |
− | ==== STEM Solvers ====
| + | |
− | *Available [[STEM_Solvers|Solvers]]
| + | |
| **STEM Native Solvers | | **STEM Native Solvers |
| **Apache Common Math Solvers | | **Apache Common Math Solvers |
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| *[[Transportation Models|Transportation Models]] | | *[[Transportation Models|Transportation Models]] |
| *[[Air Travel Model|Air Travel Model]] | | *[[Air Travel Model|Air Travel Model]] |
− | |-
| + | *'''Modeling New Diseases''' |
− | ! style="background: #efefef;" |
| + | |
− | === Release Planning ===
| + | |
− | ! colspan="2" style="background: #ffdead;" |
| + | |
− | === Disclaimer ===
| + | |
− | |-
| + | |
− | |
| + | |
− | <!- bottom left (RELEASE PLANNING GOES HERE) -->
| + | |
− | ''Please also see our [http://www.eclipse.org/stem website]'' and [[Whats New in STEM|What's New in STEM]]
| + | |
− | | + | |
− | ====Next Release To Come January 30, 2015====
| + | |
− | | + | |
− | ====V2.0.2 Now Available====
| + | |
− | * Bug Fixes | + | |
− | * Updated Dengue Model and Scenario
| + | |
− | * New Campylobacter Scenario
| + | |
− | | + | |
− | ====V2.0.1 Included====
| + | |
− | * Bug Fixes
| + | |
− | * Updated Code Generator
| + | |
− | * New Campylobacter Model and Documentation
| + | |
− | * New Dengue Model and Scenario
| + | |
− | | + | |
− | ====V2.0.0 Included====
| + | |
− | * Bug Fixes
| + | |
− | * Performance Improvements
| + | |
− | * New Stochastic Model Solver
| + | |
− | * Draggable Solver Objects
| + | |
− | * Visual Editor (Integrated UI for creating new models of disease including domain specific language for epi modeling)
| + | |
− | * New Measles Model
| + | |
− | * Directionally Biased Mixing Model
| + | |
− | * New Model Generator (Makes it easy for domain experts to create new STEM Models--no programming required!!)
| + | |
− | * New Apache Library
| + | |
− | | + | |
− | ====...Future Features====
| + | |
− | * Running Distributed STEM
| + | |
− | | + | |
− | ====Release Engineering====
| + | |
− | STEM releases are created by the team of STEM committers and uploaded to Eclipse on a regular basis.
| + | |
− | | + | |
− | Documentation for the process may be found on the [[STEM Releng]] page.
| + | |
− | |
| + | |
− | <!- bottom right (DISCLAIMER GOES HERE) -->
| + | |
− | bottom right
| + | |
− | |-
| + | |
− | | colspan="3" align="center" |
| + | |
− | |}
| + | |
− | | + | |
− | | + | |
− | splunge********
| + | |
− | | + | |
− | <!--outer table-->{| style="width:98% ; border="0" ; cellpadding="0"
| + | |
− | <!--outer table-->|-
| + | |
− | <!--outer table-->|
| + | |
− | {| style="width: 100%; height: 100%; background: #f1f5fc" ; border="0" ; cellpadding="5"
| + | |
− | |- style="background: #cceeff"
| + | |
− | !
| + | |
− | === Introductory Resources ===
| + | |
− | |-
| + | |
− | |
| + | |
− | *[http://www.eclipse.org/stem/ The STEM Website]
| + | |
− | *[[About STEM]]
| + | |
− | *[[Whats New in STEM|What's New in STEM]]
| + | |
− | *STEM Tutorials on YouTube<sup>TM</sup>
| + | |
− | #[http://www.youtube.com/watch?v=MtQlS7g7Qnw STEM Model Generator (new!!)] ''requires STEM V2.0 milestone''
| + | |
− | #Full length video [http://www.youtube.com/watch?v=LfiibQX4IFE In English]
| + | |
− | #Full length video [http://www.youtube.com/watch?v=AFYXvazKkms In Hebrew]
| + | |
− | #Full length video [http://www.youtube.com/watch?v=NM5X8-MaiKo In Japanese]
| + | |
− | #Full length video [http://www.youtube.com/watch?v=3S5DbjCHsx4 In Spanish]
| + | |
− | #[http://www.youtube.com/watch?v=OoiFLemepw4 5 min Video (English)]
| + | |
− | | + | |
− | *[http://www.eclipse.org/stem/talksOnline.php Scientific Talks Online]
| + | |
− | *[[STEM FAQ|STEM FAQ]]
| + | |
− | *[[Publications and Presentations on STEM]]
| + | |
− | *[[Citing STEM]]
| + | |
− | *[[Join the STEM Community|How to Join the STEM Community]]
| + | |
− | *[[The STEM Development Team]]
| + | |
− | *[[Join the STEM Community|Weekly phone call]]
| + | |
− |
| + | |
− | ==== Getting Started ====
| + | |
− | | + | |
− | *[[STEM Installation Guide|Installing the STEM Application]]
| + | |
− | *[[STEM Overview of the STEM UI|Overview of the STEM UI and menu items ''(new)'']]
| + | |
− | *[[STEM Addons|Installing Additional Features]]
| + | |
− | *[[Sample Projects available for Download|Sample Projects (Downloadable Scenarios)]]
| + | |
− | *[[Importing and Exporting Projects]]
| + | |
− | *[[Analysis|Some Built in Tools for Analysis]]
| + | |
− | *[[Context-Sensitive Help]]
| + | |
− | *[[STEM Model Creator|Using the '''''New!!''''' STEM Model Creator tool]] (''beta'')
| + | |
− | | + | |
− | | + | |
− | |}
| + | |
− | <!--inner table start-->|
| + | |
− | {| style="width: 100%; height: 100%; background: #f1f5fc" ; border="0" ; cellpadding="5"
| + | |
− | |-style="background: #cceeff"
| + | |
− | !
| + | |
− | | + | |
− | === Tutorials ===
| + | |
− | |-
| + | |
− | |
| + | |
− | *'''[[Creating a STEM Scenario]]''' '''step by step'''
| + | |
− | *'''[[How_scenarios_are_structured| Scenario Structure: Tutorial with Templates]]'''
| + | |
− | #[[How_scenarios_are_structured#Template_for_a_Basic_Scenario_with_a_Human_Disease|Model with Human-Human Transmission]]
| + | |
− | #[[How_scenarios_are_structured#Template_for_a_Food_Borne_Disease_Scenario|Model of Food Borne disease]]
| + | |
− | *'''[[Initializing Disease Compartments|Initializing Diseases ''(Infectors, Inoculators, and Initializers)'']]'''
| + | |
− | *'''[[STEM Import Discrete Transportation Events|Import Discrete Transportation Events]]'''
| + | |
− | *'''[[Triggering interventions|Triggering Interventions]]'''
| + | |
− | #[[Triggering interventions#Social Distancing Example|Social Distancing Example]]
| + | |
− | #[[Triggering interventions#Vaccination Example|Vaccination Example]]
| + | |
− | #[[Triggering interventions#Evacuation Example|Evacuation Example]]
| + | |
− | #[[Triggering interventions#Air Transportation Example|Air Transportation Example]]
| + | |
− | | + | |
− | *'''Using Population Models'''
| + | |
− | # [[Initializing a Population]]
| + | |
− | #[[Using Structured Populations in STEM|Using Structured Populations in STEM]]
| + | |
− | #[[Using Aging Populations in STEM|Using Aging Populations in STEM]]
| + | |
− | | + | |
− | *'''Running Simulations'''
| + | |
− | #[[STEM_Map_View|The STEM Map View]]
| + | |
− | #[[Batch Mode (Running Experiments)|Running Experiments in Batch Mode]]
| + | |
− | #[[Running an Automated Experiment]]
| + | |
− | #[[STEM Headless|Running STEM Headless]]
| + | |
− | #[[Importing Data from Files]]
| + | |
− | #[[STEM Loggers|Simulation Data Logging]]
| + | |
− | #[[Visualizing STEM Simulations with Google Earth]]
| + | |
− | | + | |
− | *'''''(new)'' Automated Model Creation'''
| + | |
− | #[[STEM Model Creator]] for users (''beta'')
| + | |
− | | + | |
− | |}
| + | |
− | <!--outer table-->|- style="width:45%"
| + | |
− | <!--outer table-->|
| + | |
− | {| style="width: 100%; background: #f1f5fc" ; border="0" ; cellpadding="5"
| + | |
− | |-style="background: #cceeff"
| + | |
− | !
| + | |
− | | + | |
− | === Advanced Guides ===
| + | |
− | |-
| + | |
− | |
| + | |
− | ====Developers====
| + | |
− | *[[Welcome STEM Developers]]
| + | |
− | *[[STEM Eclipse Setup|Setting up a STEM Development Environment]]
| + | |
− | *[[STEM Design Document]]
| + | |
− | *[[STEM National Language Support | National Language Support]]
| + | |
− | *[http://www.eclipse.org/projects/project.php?id=technology.stem Project Stats]
| + | |
− | | + | |
− | *[[Building the STEM RCP Application|Building the STEM RCP Application]]
| + | |
− | *[[Running STEM from the Development Environment]]
| + | |
− | *[[Creating a Customized Color Provider|Customizing Colors]]
| + | |
− | *[[STEM Performance Tips |General tips when writing performance critical code]]
| + | |
− | | + | |
− | ====Working with Graphs====
| + | |
− | #[[Composing a Graph]]
| + | |
− | #[[Creating a new Graph|Creating a Custom Graph]] (''new'') ''seasonal migration''
| + | |
− | #[[Visualizing and Editing Graphs]] ''with the STEM Graph Editor ''
| + | |
− | #[[Importing a Pajek Graph|Importing a Graph from a Pajek File]]
| + | |
− | #[[Importing an Esri Shapefile|Importing a Graph from an Esri Shapefile]]
| + | |
− | | + | |
− | ====Modeling New Diseases====
| + | |
| #[[STEM Model Creator|Using the '''''New!!''''' STEM Model Creator tool]] (''beta'') | | #[[STEM Model Creator|Using the '''''New!!''''' STEM Model Creator tool]] (''beta'') |
| #[[STEM Model Generator]] tool (for Developers) | | #[[STEM Model Generator]] tool (for Developers) |
− | #*[[STEM_Model_Generator/Install|Model Generator Installation]] | + | #[[STEM_Model_Generator/Install|Model Generator Installation]] |
| #[[Creating a new Disease Model Plug-in|Manual Model Plug-in generation]] | | #[[Creating a new Disease Model Plug-in|Manual Model Plug-in generation]] |
| #[[Creating a new disease label|Manual Disease Label creation]] | | #[[Creating a new disease label|Manual Disease Label creation]] |
| | | |
− | ==== STEM Solvers ====
| |
− | *Available [[STEM_Solvers|Solvers]]
| |
− | **STEM Native Solvers
| |
− | **Apache Common Math Solvers
| |
− | **Stochastic Solver
| |
− |
| |
− | === Epidemiological Modeling ===
| |
| |- | | |- |
− | |
| + | ! style="background: #ffdead;" | |
− | *[[Sample Projects available for Download|Sample Projects (Downloadable Scenarios)]]
| + | |
− | * ''(new!!)'' [[Epidemiological Parameters]]
| + | |
− | *[[Introduction to Compartment Models|Intro to Compartment Models]]
| + | |
− | *[[STEM Disease Models|Disease Models (basic to advanced)]]
| + | |
− | *[[STEM Population Models|Population Models]]
| + | |
− | #[[STEM_Population_Models#Standard_Population_Model|Standard Populations]]
| + | |
− | #[[STEM_Population_Models#Advanced_Models|Insect Vectors]]
| + | |
− | #[[STEM_Population_Models#Seasonal_Migratory_Population_Model|Migratory Birds]]
| + | |
− | #[[STEM_Population_Models#Multipopulation_Models|Demographic Models (and Aging)]]
| + | |
− | *[[STEM Food and Food Borne Disease|Food Borne Disease Models]]
| + | |
− | #[[Sample_Projects_available_for_Download#1._Beef_Production|Beef Production Example]]
| + | |
− | #[[Sample_Projects_available_for_Download#2._A_scenario_for_modelling_the_transmission_of_Salmonella_to_pigs.2C_pork_and_humans|Salmonella in Pork Example]]
| + | |
− | #[[How_scenarios_are_structured#Template_for_a_Food_Borne_Disease_Scenario|How to Structure a Food Borne Disease Scenario]]
| + | |
− | *[[Transportation Models|Transportation Models]]
| + | |
− | *[[Air Travel Model|Air Travel Model]]
| + | |
− | | + | |
− | |}
| + | |
− | {| style="width: 100%; height: 100%; background: #f1f5fc" ; border="0" ; cellpadding="5"
| + | |
− | |-style="background: #cceeff" | + | |
− | !
| + | |
− | | + | |
| === Release Planning === | | === Release Planning === |
| + | ! colspan="2" style="background: #ffdead;" | |
| + | === Disclaimer === |
| |- | | |- |
| | | | | |
| + | <!-- bottom left (RELEASE PLANNING GOES HERE) --> |
| ''Please also see our [http://www.eclipse.org/stem website]'' and [[Whats New in STEM|What's New in STEM]] | | ''Please also see our [http://www.eclipse.org/stem website]'' and [[Whats New in STEM|What's New in STEM]] |
| + | * Next Release To Come January 30, 2015 |
| + | * V2.0.2 Now Available |
| + | ** Bug Fixes |
| + | ** Updated Dengue Model and Scenario |
| + | ** New Campylobacter Scenario |
| + | * Release Engineering |
| + | ** STEM releases are created by the team of STEM committers and uploaded to Eclipse on a regular basis. |
| + | ** Documentation for the process may be found on the [[STEM Releng]] page. |
| + | | |
| + | <!-- bottom right (DISCLAIMER GOES HERE) --> |
| | | |
− | ====Next Release To Come January 30, 2015====
| |
| | | |
− | ====V2.0.2 Now Available====
| + | <br> |
− | * Bug Fixes
| + | Click on the header for this section to view the [[Disclaimer]]. |
− | * Updated Dengue Model and Scenario
| + | |- |
− | * New Campylobacter Scenario
| + | | colspan="3" align="center" | |
− | | + | |
− | ====V2.0.1 Included====
| + | |
− | * Bug Fixes
| + | |
− | * Updated Code Generator
| + | |
− | * New Campylobacter Model and Documentation
| + | |
− | * New Dengue Model and Scenario
| + | |
− | | + | |
− | ====V2.0.0 Included====
| + | |
− | * Bug Fixes
| + | |
− | * Performance Improvements
| + | |
− | * New Stochastic Model Solver
| + | |
− | * Draggable Solver Objects
| + | |
− | * Visual Editor (Integrated UI for creating new models of disease including domain specific language for epi modeling)
| + | |
− | * New Measles Model
| + | |
− | * Directionally Biased Mixing Model
| + | |
− | * New Model Generator (Makes it easy for domain experts to create new STEM Models--no programming required!!)
| + | |
− | * New Apache Library
| + | |
− | | + | |
− | ====...Future Features====
| + | |
− | * Running Distributed STEM
| + | |
− | | + | |
− | ====Release Engineering====
| + | |
− | STEM releases are created by the team of STEM committers and uploaded to Eclipse on a regular basis.
| + | |
− | | + | |
− | Documentation for the process may be found on the [[STEM Releng]] page.
| + | |
| |} | | |} |
− |
| |
− | <!--outer table-->|}
| |
− |
| |
− | ==[[Disclaimer]]==
| |
− |
| |
− | <br>
| |
| | | |
| [[Category:Eclipse Technology Project]] | | [[Category:Eclipse Technology Project]] |
− |
| |
− | Click on the header for this section to view the Disclaimer.
| |