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Difference between revisions of "STEM"
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*[[Whats New in STEM|What's New in STEM]] | *[[Whats New in STEM|What's New in STEM]] | ||
*STEM Tutorials on YouTube<sup>TM</sup> | *STEM Tutorials on YouTube<sup>TM</sup> | ||
− | + | #[http://www.youtube.com/watch?v=MtQlS7g7Qnw STEM Model Generator (new!!)] ''requires STEM V2.0 milestone'' | |
#Full length video [http://www.youtube.com/watch?v=LfiibQX4IFE In English] | #Full length video [http://www.youtube.com/watch?v=LfiibQX4IFE In English] | ||
#Full length video [http://www.youtube.com/watch?v=AFYXvazKkms In Hebrew] | #Full length video [http://www.youtube.com/watch?v=AFYXvazKkms In Hebrew] | ||
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*[[STEM Installation Guide|Installing the STEM Application]] | *[[STEM Installation Guide|Installing the STEM Application]] | ||
+ | *[[STEM Overview of the STEM UI|Overview of the STEM UI and menu items ''(new)'']] | ||
*[[STEM Addons|Installing Additional Features]] | *[[STEM Addons|Installing Additional Features]] | ||
*[[Sample Projects available for Download|Sample Projects (Downloadable Scenarios)]] | *[[Sample Projects available for Download|Sample Projects (Downloadable Scenarios)]] | ||
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*[[STEM Model Creator|Using the '''''New!!''''' STEM Model Creator tool]] (''beta'') | *[[STEM Model Creator|Using the '''''New!!''''' STEM Model Creator tool]] (''beta'') | ||
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*'''[[Creating a STEM Scenario]]''' '''step by step''' | *'''[[Creating a STEM Scenario]]''' '''step by step''' | ||
− | *'''[[How_scenarios_are_structured|(New!) Scenario Structure: | + | *'''[[How_scenarios_are_structured|(New!) Scenario Structure: Tutorial with Templates]]''' |
− | #[[How_scenarios_are_structured#Template_for_a_Basic_Scenario_with_a_Human_Disease|Model with | + | #[[How_scenarios_are_structured#Template_for_a_Basic_Scenario_with_a_Human_Disease|Model with Human-Human Transmission]] |
− | #[[How_scenarios_are_structured#Template_for_a_Food_Borne_Disease_Scenario|Model of | + | #[[How_scenarios_are_structured#Template_for_a_Food_Borne_Disease_Scenario|Model of Food Borne disease]] |
*'''[[Initializing Disease Compartments|Initializing Diseases ''(Infectors, Inoculators, and Initializers)'']]''' | *'''[[Initializing Disease Compartments|Initializing Diseases ''(Infectors, Inoculators, and Initializers)'']]''' | ||
*'''[[STEM Import Discrete Transportation Events|Import Discrete Transportation Events]]''' | *'''[[STEM Import Discrete Transportation Events|Import Discrete Transportation Events]]''' | ||
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=== Advanced Guides === | === Advanced Guides === | ||
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==== STEM Solvers ==== | ==== STEM Solvers ==== | ||
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*Available [[STEM_Solvers|Solvers]] | *Available [[STEM_Solvers|Solvers]] | ||
**'''''New!!''''' [[STEM_Solvers#Stochastic_Solver|Stochastic Solver]] | **'''''New!!''''' [[STEM_Solvers#Stochastic_Solver|Stochastic Solver]] | ||
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|} | |} | ||
<!--outer table-->| | <!--outer table-->| | ||
+ | {| style="width: 100%; height: 100%; background: #f1f5fc" ; border="0" ; cellpadding="5" | ||
+ | |-style="background: #cceeff" | ||
+ | ! | ||
+ | === Epidemiological Modeling === | ||
+ | |- | ||
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+ | *[[Sample Projects available for Download|Sample Projects (Downloadable Scenarios)]] | ||
+ | *[[Introduction to Compartment Models|Intro to Compartment Models]] | ||
+ | *[[STEM Disease Models|Disease Models (basic to advanced)]] | ||
+ | *[[STEM Population Models|Population Models]] | ||
+ | #[[STEM_Population_Models#Standard_Population_Model|Standard Populations]] | ||
+ | #[[STEM_Population_Models#Advanced_Models|Insect Vectors]] | ||
+ | #[[STEM_Population_Models#Seasonal_Migratory_Population_Model|Migratory Birds ''(new)'']] | ||
+ | #[[STEM_Population_Models#Multipopulation_Models|Demographic Models (and Aging)]] | ||
+ | *'''''New!!''''' [[STEM Food and Food Borne Disease|Food Borne Disease Models''']] | ||
+ | #[[Sample_Projects_available_for_Download#1._Beef_Production|Beef Production Example]] | ||
+ | #[[Sample_Projects_available_for_Download#2._A_scenario_for_modelling_the_transmission_of_Salmonella_to_pigs.2C_pork_and_humans|Salmonella in Pork Example]] | ||
+ | #[[How_scenarios_are_structured#Template_for_a_Food_Borne_Disease_Scenario|How to Structure a Food Borne Disease Scenario]] | ||
+ | *[[Transportation Models|Transportation Models]] | ||
+ | *[[Air Travel Model|Air Travel Model]] | ||
+ | |||
+ | |} | ||
{| style="width: 100%; height: 100%; background: #f1f5fc" ; border="0" ; cellpadding="5" | {| style="width: 100%; height: 100%; background: #f1f5fc" ; border="0" ; cellpadding="5" | ||
|-style="background: #cceeff" | |-style="background: #cceeff" | ||
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''Please also see our [http://www.eclipse.org/stem website]'' and [[Whats New in STEM|What's New in STEM]] | ''Please also see our [http://www.eclipse.org/stem website]'' and [[Whats New in STEM|What's New in STEM]] | ||
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− | ====V2.0.0 | + | ====V2.0.0 Milestone 3 ==== |
Planning | Planning | ||
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* Bug Fixes | * Bug Fixes | ||
* New Stochastic model solver | * New Stochastic model solver | ||
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* Add model generator Feature to STEM-core (with required plugins) | * Add model generator Feature to STEM-core (with required plugins) | ||
* Customize Project Explorer (show/hide generated Java code) | * Customize Project Explorer (show/hide generated Java code) | ||
− | * Hot injection of generated plugins | + | * Hot injection of generated plugins |
====...future==== | ====...future==== | ||
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<br/> | <br/> | ||
on the [[STEM Releng]] page. | on the [[STEM Releng]] page. | ||
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Revision as of 18:04, 26 September 2013
Contents |
The Spatio-Temporal Epidemiological Modeler (STEM) is a tool designed to help scientists and public health officials create and use models of emerging infectious diseases. STEM uses mathematical models of diseases (based on differential equations) to simulate the development or evolution of a disease in space and time (e.g., avian flu or salmonella). These models could aid in understanding, and potentially preventing, the spread of such diseases. STEM also comes pre-configured with a vast amount of reference or denominator data for the entire world. By using and extending the data and models in STEM it is possible to rapidly prototype and test models for emerging infectious disease. STEM also provides tools to help you compare and validate your models. As an open source project, the ultimate goal of STEM is to support and encourage a community of scientists that not only use STEM as a tool but also contribute back to it. STEM is designed so that models and scenarios can be easily shared, extended, and built upon.
STEM Documentation
Disclaimer
Click on the header for this section to view the Disclaimer.