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Difference between revisions of "STEM"
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*[[STEM Addons|Installing Additional Features]] | *[[STEM Addons|Installing Additional Features]] | ||
*[[Sample Projects available for Download|Sample Projects (Downloadable Scenarios)]] | *[[Sample Projects available for Download|Sample Projects (Downloadable Scenarios)]] | ||
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#[[Importing Data from Files]] | #[[Importing Data from Files]] | ||
#[[STEM Loggers|Simulation Data Logging]] | #[[STEM Loggers|Simulation Data Logging]] | ||
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+ | *'''''(new)'' Automated Model Creation''' | ||
+ | #[[STEM Model Creator]] for users (''beta'') | ||
*'''[[Importing and Exporting Projects]]''' | *'''[[Importing and Exporting Projects]]''' | ||
*'''[[Analysis|Some Built in Tools for Analysis]]''' | *'''[[Analysis|Some Built in Tools for Analysis]]''' | ||
*'''[[Context-Sensitive Help]]''' | *'''[[Context-Sensitive Help]]''' | ||
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+ | *[[STEM Model Creator|Using the '''''New!!''''' STEM Model Creator tool]] (''beta'') | ||
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<!--outer table-->|- style="width:45%" | <!--outer table-->|- style="width:45%" | ||
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====Modeling New Diseases==== | ====Modeling New Diseases==== | ||
− | #[[Creating a new Disease Model Plug-in| | + | #[[STEM Model Creator|Using the '''''New!!''''' STEM Model Creator tool]] (''beta'') |
− | #[[Creating a new disease label| | + | #[[STEM Model Generator]] tool (for Developers) |
+ | #*[[STEM_Model_Generator/Install|Model Generator Installation]] | ||
+ | #[[Creating a new Disease Model Plug-in|Manual Model Plug-in generation]] | ||
+ | #[[Creating a new disease label|Manual Disease Label creation]] | ||
==== Epidemiological Modeling ==== | ==== Epidemiological Modeling ==== | ||
*[[Sample Projects available for Download|Sample Projects (Downloadable Scenarios)]] | *[[Sample Projects available for Download|Sample Projects (Downloadable Scenarios)]] | ||
*[[Introduction to Compartment Models|Intro to Compartment Models]] | *[[Introduction to Compartment Models|Intro to Compartment Models]] | ||
− | *[[STEM Disease Models|Disease Models]] | + | *[[STEM Disease Models|Disease Models (basic to advanced)]] |
*[[STEM Population Models|Population Models]] | *[[STEM Population Models|Population Models]] | ||
− | *[[STEM Food and Food Borne Disease|Food Borne Disease Models]] | + | #[[STEM_Population_Models#Standard_Population_Model|Standard Populations]] |
− | #[[Sample_Projects_available_for_Download#1._Beef_Production|Beef | + | #[[STEM_Population_Models#Advanced_Models|Insect Vectors]] |
− | #[[Sample_Projects_available_for_Download#2._A_scenario_for_modelling_the_transmission_of_Salmonella_to_pigs.2C_pork_and_humans|Salmonella in | + | #[[STEM_Population_Models#Multipopulation_Models|Demographic Models (and Aging)]] |
− | #[[How_scenarios_are_structured#Template_for_a_Food_Borne_Disease_Scenario|How to | + | *'''''New!!''''' [[STEM Food and Food Borne Disease|Food Borne Disease Models''']] |
+ | #[[Sample_Projects_available_for_Download#1._Beef_Production|Beef Production Example]] | ||
+ | #[[Sample_Projects_available_for_Download#2._A_scenario_for_modelling_the_transmission_of_Salmonella_to_pigs.2C_pork_and_humans|Salmonella in Pork Example]] | ||
+ | #[[How_scenarios_are_structured#Template_for_a_Food_Borne_Disease_Scenario|How to Structure a Food Borne Disease Scenario]] | ||
*[[Transportation Models|Transportation Models]] | *[[Transportation Models|Transportation Models]] | ||
*[[Air Travel Model|Air Travel Model]] | *[[Air Travel Model|Air Travel Model]] | ||
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− | '' | + | ''Please also see our [http://www.eclipse.org/stem website]'' and [[Whats New in STEM|What's New in STEM]] |
<br/> | <br/> | ||
<br/> | <br/> | ||
− | ==== | + | ====V2.0.0 M1 ==== |
− | + | Planning | |
− | * | + | * Integrated UI for creating new models of disease including domain specific language for epi modeling |
− | + | * Parameter sensitivity analysis | |
− | * | + | * mcmc optimizer |
− | * | + | * Advanced Dengue Example |
− | * | + | * New Food Distribution Analysis view (incubation) |
− | *New | + | * New Apache library |
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− | * New | + | |
====...future==== | ====...future==== | ||
* Running Distributed STEM | * Running Distributed STEM | ||
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[[Category:Eclipse Technology Project]] | [[Category:Eclipse Technology Project]] | ||
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+ | Click on the header for this section to view the Disclaimer. |
Revision as of 11:50, 4 April 2013
The Spatio-Temporal Epidemiological Modeler (STEM) is a tool designed to help scientists and public health officials create and use models of emerging infectious diseases. STEM uses mathematical models of diseases (based on differential equations) to simulate the development or evolution of a disease in space and time (e.g., avian flu or salmonella). These models could aid in understanding, and potentially preventing, the spread of such diseases. STEM also comes pre-configured with a vast amount of reference or denominator data for the entire world. By using and extending the data and models in STEM it is possible to rapidly prototype and test models for emerging infectious disease. STEM also provides tools to help you compare and validate your models. As an open source project, the ultimate goal of STEM is to support and encourage a community of scientists that not only use STEM as a tool but also contribute back to it. STEM is designed so that models and scenarios can be easily shared, extended, and built upon.
STEM Documentation
Disclaimer
Click on the header for this section to view the Disclaimer.