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Difference between revisions of "STEM"
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*[http://www.eclipse.org/stem/ The STEM Website] | *[http://www.eclipse.org/stem/ The STEM Website] | ||
*[[About STEM]] | *[[About STEM]] | ||
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*[[Join the STEM Community|Weekly phone call]] | *[[Join the STEM Community|Weekly phone call]] | ||
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| + | <!-- upper right (TUTORIALS) --> | ||
*'''[[Creating a STEM Scenario]]''' '''step by step''' | *'''[[Creating a STEM Scenario]]''' '''step by step''' | ||
*'''[[How_scenarios_are_structured| Scenario Structure: Tutorial with Templates]]''' | *'''[[How_scenarios_are_structured| Scenario Structure: Tutorial with Templates]]''' | ||
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=== Epidemiological Modeling === | === Epidemiological Modeling === | ||
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| − | | style="border-bottom: 3px solid grey;" | middle left | + | | style="border-bottom: 3px solid grey;" |
| − | | style="border-bottom: 3px solid grey;" | middle right | + | | |
| + | <!-- middle left -> | ||
| + | ====Developers==== | ||
| + | *[[Welcome STEM Developers]] | ||
| + | *[[STEM Eclipse Setup|Setting up a STEM Development Environment]] | ||
| + | *[[STEM Design Document]] | ||
| + | *[[STEM National Language Support | National Language Support]] | ||
| + | *[http://www.eclipse.org/projects/project.php?id=technology.stem Project Stats] | ||
| + | |||
| + | *[[Building the STEM RCP Application|Building the STEM RCP Application]] | ||
| + | *[[Running STEM from the Development Environment]] | ||
| + | *[[Creating a Customized Color Provider|Customizing Colors]] | ||
| + | *[[STEM Performance Tips |General tips when writing performance critical code]] | ||
| + | |||
| + | ====Working with Graphs==== | ||
| + | #[[Composing a Graph]] | ||
| + | #[[Creating a new Graph|Creating a Custom Graph]] (''new'') ''seasonal migration'' | ||
| + | #[[Visualizing and Editing Graphs]] ''with the STEM Graph Editor '' | ||
| + | #[[Importing a Pajek Graph|Importing a Graph from a Pajek File]] | ||
| + | #[[Importing an Esri Shapefile|Importing a Graph from an Esri Shapefile]] | ||
| + | |||
| + | ====Modeling New Diseases==== | ||
| + | #[[STEM Model Creator|Using the '''''New!!''''' STEM Model Creator tool]] (''beta'') | ||
| + | #[[STEM Model Generator]] tool (for Developers) | ||
| + | #*[[STEM_Model_Generator/Install|Model Generator Installation]] | ||
| + | #[[Creating a new Disease Model Plug-in|Manual Model Plug-in generation]] | ||
| + | #[[Creating a new disease label|Manual Disease Label creation]] | ||
| + | |||
| + | ==== STEM Solvers ==== | ||
| + | *Available [[STEM_Solvers|Solvers]] | ||
| + | **STEM Native Solvers | ||
| + | **Apache Common Math Solvers | ||
| + | **Stochastic Solver | ||
| + | | style="border-bottom: 3px solid grey;" | ||
| + | | <!-- middle right --> | ||
| + | *[[Sample Projects available for Download|Sample Projects (Downloadable Scenarios)]] | ||
| + | * ''(new!!)'' [[Epidemiological Parameters]] | ||
| + | *[[Introduction to Compartment Models|Intro to Compartment Models]] | ||
| + | *[[STEM Disease Models|Disease Models (basic to advanced)]] | ||
| + | *[[STEM Population Models|Population Models]] | ||
| + | #[[STEM_Population_Models#Standard_Population_Model|Standard Populations]] | ||
| + | #[[STEM_Population_Models#Advanced_Models|Insect Vectors]] | ||
| + | #[[STEM_Population_Models#Seasonal_Migratory_Population_Model|Migratory Birds]] | ||
| + | #[[STEM_Population_Models#Multipopulation_Models|Demographic Models (and Aging)]] | ||
| + | *[[STEM Food and Food Borne Disease|Food Borne Disease Models]] | ||
| + | #[[Sample_Projects_available_for_Download#1._Beef_Production|Beef Production Example]] | ||
| + | #[[Sample_Projects_available_for_Download#2._A_scenario_for_modelling_the_transmission_of_Salmonella_to_pigs.2C_pork_and_humans|Salmonella in Pork Example]] | ||
| + | #[[How_scenarios_are_structured#Template_for_a_Food_Borne_Disease_Scenario|How to Structure a Food Borne Disease Scenario]] | ||
| + | *[[Transportation Models|Transportation Models]] | ||
| + | *[[Air Travel Model|Air Travel Model]] | ||
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Revision as of 14:40, 20 April 2015
Contents |
Ebola Community Efforts
Community Ebola Modeling Phone Call
Ebola Models
How to install the Ebola models
Literature Ebola References
Data Ebola Reference Data
Please sign up for the stem-ebola mailing list
The Spatio-Temporal Epidemiological Modeler (STEM) is a tool designed to help scientists and public health officials create and use models of emerging infectious diseases. STEM uses mathematical models of diseases (based on differential equations) to simulate the development or evolution of a disease in space and time (e.g., avian flu or salmonella). These models could aid in understanding, and potentially preventing, the spread of such diseases. STEM also comes pre-configured with a vast amount of reference or denominator data for the entire world. By using and extending the data and models in STEM it is possible to rapidly prototype and test models for emerging infectious disease. STEM also provides tools to help you compare and validate your models. As an open source project, the ultimate goal of STEM is to support and encourage a community of scientists that not only use STEM as a tool but also contribute back to it. STEM is designed so that models and scenarios can be easily shared, extended, and built upon.
STEM Documentation
Introductory Resources |
Tutorials | |
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Advanced Guides |
Epidemiological Modeling | |
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Release Planning |
Disclaimer | |
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Disclaimer
Click on the header for this section to view the Disclaimer.