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Difference between revisions of "STEM"
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− | The '''Spatio-Temporal Epidemiological Modeler (STEM)''' is a tool designed to help scientists and public health officials create and use models of emerging infectious diseases. STEM uses mathematical models of diseases (based on differential equations) to simulate the development or evolution of a disease in space and time (e.g., avian flu or salmonella). These models could aid in understanding, and potentially preventing, the spread of such diseases. STEM also comes pre-configured with a vast amount of reference or denominator data for the entire world. By using and extending the data and models in STEM it is possible to rapidly prototype and test models for emerging infectious disease. STEM also provides tools to help you compare and validate your models. As an open source project, the ultimate goal of STEM is to support and encourage a community of scientists that not only use STEM as a tool but also contribute back to it. STEM is designed so that models and scenarios can be easily shared, extended, and built upon. | + | == '''Ebola Community Efforts''' == |
+ | ==== [[Community Ebola Modeling Phone Call]] ==== | ||
+ | |||
+ | ==== [[Ebola Models]] ==== | ||
+ | ==== [https://wiki.eclipse.org/Ebola_How_To How to install the Ebola models]==== | ||
+ | ==== Literature [[Ebola References]]==== | ||
+ | ==== Data [[Ebola Reference Data]]==== | ||
+ | ==== Please sign up for the [https://dev.eclipse.org/mailman/listinfo/stem-ebola stem-ebola mailing list]==== | ||
+ | |||
+ | The '''Spatio-Temporal Epidemiological Modeler (STEM)''' is a tool designed to help scientists and public health officials create and use models of emerging infectious diseases. STEM uses mathematical models of diseases (based on differential equations) to simulate the development or evolution of a disease in space and time (e.g., avian flu or salmonella). These models could aid in understanding, and potentially preventing, the spread of such diseases. STEM also comes pre-configured with a vast amount of reference or denominator data for the entire world. By using and extending the data and models in STEM it is possible to rapidly prototype and test models for emerging infectious disease. STEM also provides tools to help you compare and validate your models. As an open source project, the ultimate goal of STEM is to support and encourage a community of scientists that not only use STEM as a tool but also contribute back to it. STEM is designed so that models and scenarios can be easily shared, extended, and built upon. | ||
== '''STEM Documentation''' == | == '''STEM Documentation''' == | ||
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*[[STEM FAQ|STEM FAQ]] | *[[STEM FAQ|STEM FAQ]] | ||
*[[Publications and Presentations on STEM]] | *[[Publications and Presentations on STEM]] | ||
+ | *[[Citing STEM]] | ||
*[[Join the STEM Community|How to Join the STEM Community]] | *[[Join the STEM Community|How to Join the STEM Community]] | ||
*[[The STEM Development Team]] | *[[The STEM Development Team]] | ||
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#[[Importing Data from Files]] | #[[Importing Data from Files]] | ||
#[[STEM Loggers|Simulation Data Logging]] | #[[STEM Loggers|Simulation Data Logging]] | ||
+ | #[[Visualizing STEM Simulations with Google Earth]] | ||
*'''''(new)'' Automated Model Creation''' | *'''''(new)'' Automated Model Creation''' | ||
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==== STEM Solvers ==== | ==== STEM Solvers ==== | ||
*Available [[STEM_Solvers|Solvers]] | *Available [[STEM_Solvers|Solvers]] | ||
− | ** | + | **STEM Native Solvers |
− | + | **Apache Common Math Solvers | |
− | + | **Stochastic Solver | |
− | + | ||
− | + | ||
− | + | ||
=== Epidemiological Modeling === | === Epidemiological Modeling === | ||
|- | |- | ||
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#[[STEM_Population_Models#Seasonal_Migratory_Population_Model|Migratory Birds]] | #[[STEM_Population_Models#Seasonal_Migratory_Population_Model|Migratory Birds]] | ||
#[[STEM_Population_Models#Multipopulation_Models|Demographic Models (and Aging)]] | #[[STEM_Population_Models#Multipopulation_Models|Demographic Models (and Aging)]] | ||
− | * | + | *[[STEM Food and Food Borne Disease|Food Borne Disease Models]] |
#[[Sample_Projects_available_for_Download#1._Beef_Production|Beef Production Example]] | #[[Sample_Projects_available_for_Download#1._Beef_Production|Beef Production Example]] | ||
#[[Sample_Projects_available_for_Download#2._A_scenario_for_modelling_the_transmission_of_Salmonella_to_pigs.2C_pork_and_humans|Salmonella in Pork Example]] | #[[Sample_Projects_available_for_Download#2._A_scenario_for_modelling_the_transmission_of_Salmonella_to_pigs.2C_pork_and_humans|Salmonella in Pork Example]] | ||
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''Please also see our [http://www.eclipse.org/stem website]'' and [[Whats New in STEM|What's New in STEM]] | ''Please also see our [http://www.eclipse.org/stem website]'' and [[Whats New in STEM|What's New in STEM]] | ||
− | ====Next Release To Come | + | ====Next Release To Come January 30, 2015==== |
====V2.0.2 Now Available==== | ====V2.0.2 Now Available==== | ||
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====Release Engineering==== | ====Release Engineering==== | ||
− | STEM releases are created by the team of STEM committers and uploaded | + | STEM releases are created by the team of STEM committers and uploaded to Eclipse on a regular basis. |
− | + | ||
− | to Eclipse on a regular basis. | + | Documentation for the process may be found on the [[STEM Releng]] page. |
− | Documentation for the process may be found | + | |
− | + | ||
− | on the [[STEM Releng]] page. | + | |
|} | |} | ||
Revision as of 18:59, 16 February 2015
Ebola Community Efforts
Community Ebola Modeling Phone Call
Ebola Models
How to install the Ebola models
Literature Ebola References
Data Ebola Reference Data
Please sign up for the stem-ebola mailing list
The Spatio-Temporal Epidemiological Modeler (STEM) is a tool designed to help scientists and public health officials create and use models of emerging infectious diseases. STEM uses mathematical models of diseases (based on differential equations) to simulate the development or evolution of a disease in space and time (e.g., avian flu or salmonella). These models could aid in understanding, and potentially preventing, the spread of such diseases. STEM also comes pre-configured with a vast amount of reference or denominator data for the entire world. By using and extending the data and models in STEM it is possible to rapidly prototype and test models for emerging infectious disease. STEM also provides tools to help you compare and validate your models. As an open source project, the ultimate goal of STEM is to support and encourage a community of scientists that not only use STEM as a tool but also contribute back to it. STEM is designed so that models and scenarios can be easily shared, extended, and built upon.
STEM Documentation
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Disclaimer
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