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Difference between revisions of "STEM"
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*[[Whats New in STEM|What's New in STEM]] | *[[Whats New in STEM|What's New in STEM]] | ||
*STEM Tutorials on YouTube<sup>TM</sup> | *STEM Tutorials on YouTube<sup>TM</sup> | ||
| − | + | #[http://www.youtube.com/watch?v=MtQlS7g7Qnw STEM Model Generator (new!!)] ''requires STEM V2.0 milestone'' | |
#Full length video [http://www.youtube.com/watch?v=LfiibQX4IFE In English] | #Full length video [http://www.youtube.com/watch?v=LfiibQX4IFE In English] | ||
#Full length video [http://www.youtube.com/watch?v=AFYXvazKkms In Hebrew] | #Full length video [http://www.youtube.com/watch?v=AFYXvazKkms In Hebrew] | ||
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*[[STEM Installation Guide|Installing the STEM Application]] | *[[STEM Installation Guide|Installing the STEM Application]] | ||
| + | *[[STEM Overview of the STEM UI|Overview of the STEM UI and menu items ''(new)'']] | ||
*[[STEM Addons|Installing Additional Features]] | *[[STEM Addons|Installing Additional Features]] | ||
*[[Sample Projects available for Download|Sample Projects (Downloadable Scenarios)]] | *[[Sample Projects available for Download|Sample Projects (Downloadable Scenarios)]] | ||
| − | + | *[[Importing and Exporting Projects]] | |
| − | + | *[[Analysis|Some Built in Tools for Analysis]] | |
| − | + | *[[Context-Sensitive Help]] | |
| − | *[[ | + | *[[STEM Model Creator|Using the '''''New!!''''' STEM Model Creator tool]] (''beta'') |
| − | *[[ | + | |
| − | *[[ | + | |
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| − | *[[STEM | + | |
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*'''[[Creating a STEM Scenario]]''' '''step by step''' | *'''[[Creating a STEM Scenario]]''' '''step by step''' | ||
| − | *'''[[How_scenarios_are_structured|(New!) Scenario Structure: | + | *'''[[How_scenarios_are_structured|(New!) Scenario Structure: Tutorial with Templates]]''' |
| − | #[[How_scenarios_are_structured#Template_for_a_Basic_Scenario_with_a_Human_Disease|Model with | + | #[[How_scenarios_are_structured#Template_for_a_Basic_Scenario_with_a_Human_Disease|Model with Human-Human Transmission]] |
| − | #[[How_scenarios_are_structured#Template_for_a_Food_Borne_Disease_Scenario|Model of | + | #[[How_scenarios_are_structured#Template_for_a_Food_Borne_Disease_Scenario|Model of Food Borne disease]] |
*'''[[Initializing Disease Compartments|Initializing Diseases ''(Infectors, Inoculators, and Initializers)'']]''' | *'''[[Initializing Disease Compartments|Initializing Diseases ''(Infectors, Inoculators, and Initializers)'']]''' | ||
*'''[[STEM Import Discrete Transportation Events|Import Discrete Transportation Events]]''' | *'''[[STEM Import Discrete Transportation Events|Import Discrete Transportation Events]]''' | ||
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#[[STEM Loggers|Simulation Data Logging]] | #[[STEM Loggers|Simulation Data Logging]] | ||
| − | *''' | + | *'''''(new)'' Automated Model Creation''' |
| − | + | #[[STEM Model Creator]] for users (''beta'') | |
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|} | |} | ||
<!--outer table-->|- style="width:45%" | <!--outer table-->|- style="width:45%" | ||
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=== Advanced Guides === | === Advanced Guides === | ||
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====Working with Graphs==== | ====Working with Graphs==== | ||
#[[Composing a Graph]] | #[[Composing a Graph]] | ||
| − | #[[Creating a new Graph|Creating a Custom Graph]] | + | #[[Creating a new Graph|Creating a Custom Graph]] (''new'') ''seasonal migration'' |
#[[Visualizing and Editing Graphs]] ''with the STEM Graph Editor '' | #[[Visualizing and Editing Graphs]] ''with the STEM Graph Editor '' | ||
#[[Importing a Pajek Graph|Importing a Graph from a Pajek File]] | #[[Importing a Pajek Graph|Importing a Graph from a Pajek File]] | ||
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====Modeling New Diseases==== | ====Modeling New Diseases==== | ||
| − | #[[Creating a new Disease Model Plug-in| | + | #[[STEM Model Creator|Using the '''''New!!''''' STEM Model Creator tool]] (''beta'') |
| − | #[[Creating a new disease label| | + | #[[STEM Model Generator]] tool (for Developers) |
| + | #*[[STEM_Model_Generator/Install|Model Generator Installation]] | ||
| + | #[[Creating a new Disease Model Plug-in|Manual Model Plug-in generation]] | ||
| + | #[[Creating a new disease label|Manual Disease Label creation]] | ||
| − | ==== Epidemiological Modeling === | + | ==== STEM Solvers ==== |
| + | *Available [[STEM_Solvers|Solvers]] | ||
| + | **'''''New!!''''' [[STEM_Solvers#Stochastic_Solver|Stochastic Solver]] | ||
| + | |} | ||
| + | <!--outer table-->| | ||
| + | {| style="width: 100%; height: 100%; background: #f1f5fc" ; border="0" ; cellpadding="5" | ||
| + | |-style="background: #cceeff" | ||
| + | ! | ||
| + | === Epidemiological Modeling === | ||
| + | |- | ||
| + | | | ||
*[[Sample Projects available for Download|Sample Projects (Downloadable Scenarios)]] | *[[Sample Projects available for Download|Sample Projects (Downloadable Scenarios)]] | ||
*[[Introduction to Compartment Models|Intro to Compartment Models]] | *[[Introduction to Compartment Models|Intro to Compartment Models]] | ||
| − | *[[STEM Disease Models|Disease Models | + | *[[STEM Disease Models|Disease Models (basic to advanced)]] |
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*[[STEM Population Models|Population Models]] | *[[STEM Population Models|Population Models]] | ||
| − | #[[STEM_Population_Models#Standard_Population_Model| | + | #[[STEM_Population_Models#Standard_Population_Model|Standard Populations]] |
| − | #[[STEM_Population_Models#Advanced_Models| | + | #[[STEM_Population_Models#Advanced_Models|Insect Vectors]] |
| − | #[[STEM_Population_Models#Multipopulation_Models| | + | #[[STEM_Population_Models#Seasonal_Migratory_Population_Model|Migratory Birds ''(new)'']] |
| − | *[[STEM Food and Food Borne Disease| | + | #[[STEM_Population_Models#Multipopulation_Models|Demographic Models (and Aging)]] |
| − | #[[Sample_Projects_available_for_Download#1._Beef_Production|Beef | + | *'''''New!!''''' [[STEM Food and Food Borne Disease|Food Borne Disease Models''']] |
| − | #[[Sample_Projects_available_for_Download#2._A_scenario_for_modelling_the_transmission_of_Salmonella_to_pigs.2C_pork_and_humans|Salmonella in | + | #[[Sample_Projects_available_for_Download#1._Beef_Production|Beef Production Example]] |
| − | #[[How_scenarios_are_structured#Template_for_a_Food_Borne_Disease_Scenario|How to | + | #[[Sample_Projects_available_for_Download#2._A_scenario_for_modelling_the_transmission_of_Salmonella_to_pigs.2C_pork_and_humans|Salmonella in Pork Example]] |
| + | #[[How_scenarios_are_structured#Template_for_a_Food_Borne_Disease_Scenario|How to Structure a Food Borne Disease Scenario]] | ||
*[[Transportation Models|Transportation Models]] | *[[Transportation Models|Transportation Models]] | ||
*[[Air Travel Model|Air Travel Model]] | *[[Air Travel Model|Air Travel Model]] | ||
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|} | |} | ||
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{| style="width: 100%; height: 100%; background: #f1f5fc" ; border="0" ; cellpadding="5" | {| style="width: 100%; height: 100%; background: #f1f5fc" ; border="0" ; cellpadding="5" | ||
|-style="background: #cceeff" | |-style="background: #cceeff" | ||
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| − | '' | + | ''Please also see our [http://www.eclipse.org/stem website]'' and [[Whats New in STEM|What's New in STEM]] |
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| − | ==== | + | ====V2.0.0 is now Available ==== |
| − | + | Features | |
| − | + | Features | |
| − | * | + | * Bug Fixes |
| − | * | + | * Performance improvements |
| − | + | * New Stochastic model solver | |
| − | + | * Draggable solver objects | |
| − | *New | + | * Visual Editor (Integrated UI for creating new models of disease including domain specific language for epi modeling) |
| − | * | + | * New Measles model |
| − | * | + | * Directionally biased mixing model |
| − | * | + | * New Model Generator makes it easy for domain experts to create new STEM Models (no programming required) !! |
| − | * | + | * New Apache library |
| − | * | + | |
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| − | * | + | |
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| − | ==== | + | ==== V2.0.1 ==== |
| − | + | Planned for 12/11 | |
| − | * Bug Fixes | + | Features |
| − | + | * Bug Fixes | |
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====...future==== | ====...future==== | ||
* Running Distributed STEM | * Running Distributed STEM | ||
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| + | ====Release Engineering==== | ||
| + | STEM releases are created by the team of STEM committers and uploaded | ||
| + | <br/> | ||
| + | to Eclipse on a regular basis. | ||
| + | Documentation for the process may be found | ||
| + | <br/> | ||
| + | on the [[STEM Releng]] page. | ||
|} | |} | ||
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<!--outer table-->|} | <!--outer table-->|} | ||
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[[Category:Eclipse Technology Project]] | [[Category:Eclipse Technology Project]] | ||
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| + | Click on the header for this section to view the Disclaimer. | ||
Revision as of 13:39, 14 November 2013
The Spatio-Temporal Epidemiological Modeler (STEM) is a tool designed to help scientists and public health officials create and use models of emerging infectious diseases. STEM uses mathematical models of diseases (based on differential equations) to simulate the development or evolution of a disease in space and time (e.g., avian flu or salmonella). These models could aid in understanding, and potentially preventing, the spread of such diseases. STEM also comes pre-configured with a vast amount of reference or denominator data for the entire world. By using and extending the data and models in STEM it is possible to rapidly prototype and test models for emerging infectious disease. STEM also provides tools to help you compare and validate your models. As an open source project, the ultimate goal of STEM is to support and encourage a community of scientists that not only use STEM as a tool but also contribute back to it. STEM is designed so that models and scenarios can be easily shared, extended, and built upon.
STEM Documentation
Disclaimer
Click on the header for this section to view the Disclaimer.