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Difference between revisions of "STEM"
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#[[Importing Data from Files]] | #[[Importing Data from Files]] | ||
#[[STEM Loggers|Simulation Data Logging]] | #[[STEM Loggers|Simulation Data Logging]] | ||
| + | |||
| + | *'''''(new)'' Automated Model Creation''' | ||
| + | #[[STEM Model Creator]] for users (''beta'') | ||
*'''[[Importing and Exporting Projects]]''' | *'''[[Importing and Exporting Projects]]''' | ||
*'''[[Analysis|Some Built in Tools for Analysis]]''' | *'''[[Analysis|Some Built in Tools for Analysis]]''' | ||
*'''[[Context-Sensitive Help]]''' | *'''[[Context-Sensitive Help]]''' | ||
| + | |||
| + | *[[STEM Model Creator|Using the '''''New!!''''' STEM Model Creator tool]] (''beta'') | ||
|} | |} | ||
<!--outer table-->|- style="width:45%" | <!--outer table-->|- style="width:45%" | ||
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====Working with Graphs==== | ====Working with Graphs==== | ||
#[[Composing a Graph]] | #[[Composing a Graph]] | ||
| − | #[[Creating a new Graph|Creating a Custom Graph]] | + | #[[Creating a new Graph|Creating a Custom Graph]] (''new'') ''seasonal migration'' |
#[[Visualizing and Editing Graphs]] ''with the STEM Graph Editor '' | #[[Visualizing and Editing Graphs]] ''with the STEM Graph Editor '' | ||
#[[Importing a Pajek Graph|Importing a Graph from a Pajek File]] | #[[Importing a Pajek Graph|Importing a Graph from a Pajek File]] | ||
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====Modeling New Diseases==== | ====Modeling New Diseases==== | ||
| − | #[[Creating a new Disease Model Plug-in| | + | #[[STEM Model Creator|Using the '''''New!!''''' STEM Model Creator tool]] (''beta'') |
| − | #[[Creating a new disease label| | + | #[[STEM Model Generator]] tool (for Developers) |
| + | #*[[STEM_Model_Generator/Install|Model Generator Installation]] | ||
| + | #[[Creating a new Disease Model Plug-in|Manual Model Plug-in generation]] | ||
| + | #[[Creating a new disease label|Manual Disease Label creation]] | ||
==== Epidemiological Modeling ==== | ==== Epidemiological Modeling ==== | ||
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*[[STEM Disease Models|Disease Models (basic to advanced)]] | *[[STEM Disease Models|Disease Models (basic to advanced)]] | ||
*[[STEM Population Models|Population Models]] | *[[STEM Population Models|Population Models]] | ||
| − | #[[STEM_Population_Models#Standard_Population_Model| | + | #[[STEM_Population_Models#Standard_Population_Model|Standard Populations]] |
| − | #[[STEM_Population_Models#Advanced_Models| | + | #[[STEM_Population_Models#Advanced_Models|Insect Vectors]] |
| − | #[[STEM_Population_Models#Multipopulation_Models| | + | #[[STEM_Population_Models#Seasonal_Migratory_Population_Model|Migratory Birds ''(new)'']] |
| − | *[[STEM Food and Food Borne Disease| | + | #[[STEM_Population_Models#Multipopulation_Models|Demographic Models (and Aging)]] |
| − | #[[Sample_Projects_available_for_Download#1._Beef_Production|Beef | + | *'''''New!!''''' [[STEM Food and Food Borne Disease|Food Borne Disease Models''']] |
| − | #[[Sample_Projects_available_for_Download#2._A_scenario_for_modelling_the_transmission_of_Salmonella_to_pigs.2C_pork_and_humans|Salmonella in | + | #[[Sample_Projects_available_for_Download#1._Beef_Production|Beef Production Example]] |
| − | #[[How_scenarios_are_structured#Template_for_a_Food_Borne_Disease_Scenario|How to | + | #[[Sample_Projects_available_for_Download#2._A_scenario_for_modelling_the_transmission_of_Salmonella_to_pigs.2C_pork_and_humans|Salmonella in Pork Example]] |
| + | #[[How_scenarios_are_structured#Template_for_a_Food_Borne_Disease_Scenario|How to Structure a Food Borne Disease Scenario]] | ||
*[[Transportation Models|Transportation Models]] | *[[Transportation Models|Transportation Models]] | ||
*[[Air Travel Model|Air Travel Model]] | *[[Air Travel Model|Air Travel Model]] | ||
*[[STEM_Solvers|Solvers]] | *[[STEM_Solvers|Solvers]] | ||
| + | **'''''New!!''''' [[STEM_Solvers#Stochastic_Solver|Stochastic Solver]] | ||
| Line 140: | Line 150: | ||
|- | |- | ||
| | | | ||
| − | '' | + | ''Please also see our [http://www.eclipse.org/stem website]'' and [[Whats New in STEM|What's New in STEM]] |
<br/> | <br/> | ||
<br/> | <br/> | ||
| − | ==== | + | ====V2.0.0 M3 ==== |
| − | + | Planning | |
| − | + | ||
| − | * | + | * Bug Fixes |
| − | * | + | * New Stochastic model solver |
| − | * | + | * Visual Editor initial checkin |
| − | + | * New Measles model | |
| − | *New | + | * On Track: UI, model development workflow, builder tools, xtext, all in STEM |
| − | * | + | * Add model generator Feature to STEM-core (with required plugins) |
| − | * | + | * Customize Project Explorer (show/hide generated Java code) |
| − | + | * Hot injection of generated plugins | |
| − | + | ||
| − | + | ||
| − | * | + | |
| − | * | + | |
| − | + | ||
| − | + | ||
====...future==== | ====...future==== | ||
* Running Distributed STEM | * Running Distributed STEM | ||
| − | |||
| − | |||
| − | |||
| − | |||
|} | |} | ||
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[[Category:Eclipse Technology Project]] | [[Category:Eclipse Technology Project]] | ||
| + | |||
| + | Click on the header for this section to view the Disclaimer. | ||
Revision as of 07:29, 17 June 2013
The Spatio-Temporal Epidemiological Modeler (STEM) is a tool designed to help scientists and public health officials create and use models of emerging infectious diseases. STEM uses mathematical models of diseases (based on differential equations) to simulate the development or evolution of a disease in space and time (e.g., avian flu or salmonella). These models could aid in understanding, and potentially preventing, the spread of such diseases. STEM also comes pre-configured with a vast amount of reference or denominator data for the entire world. By using and extending the data and models in STEM it is possible to rapidly prototype and test models for emerging infectious disease. STEM also provides tools to help you compare and validate your models. As an open source project, the ultimate goal of STEM is to support and encourage a community of scientists that not only use STEM as a tool but also contribute back to it. STEM is designed so that models and scenarios can be easily shared, extended, and built upon.
STEM Documentation
Disclaimer
Click on the header for this section to view the Disclaimer.