If you are extending the EGL language or Java generator, you may find you need to also extend the Java-based debugger to improve the user experience. For example if you are adding a new Java class to represent an EGL type in the generated application, it will probably not look very nice in the Variables view (by default it will be displayed in the Java way, which might not match how it should be represented to an EGL user).
This document will cover the ways in which the debugger can be extended.
If you wish to control how a Java variable is displayed in the Variables view, you will need to contribute a variable adapter to the EDT Java debug framework. This is done with Eclipse extension points. In your plug-in's manifest editor, add an extension for org.eclipse.edt.debug.core.javaVariableAdapters. A reference implementation can be found in org.eclipse.edt.debug.core's plugin.xml file (see the corresponding class org.eclipse.edt.debug.internal.core.java.variables.EDTVariableAdapter).
Your contributed class will need to implement org.eclipse.edt.debug.core.java.variables.IVariableAdapter. Take a look at its source, as well as other relevant classes & interfaces, for Javadocs.
The basic idea behind a variable adapter is, given a Java variable (IJavaVariable), you first determine if it's a type you wish to adapt. If so, you then must return an IEGLJavaVariable that will correctly structure the Java variable. If the Java variable is not a type to be handled by your adapter, simply return null and the next registered adapter will be given a chance to adapt it. Note: first adapter to return a non-null variable wins, and the order of adapters being consulted is not guaranteed!
You may find several methods in org.eclipse.edt.debug.core.java.variables.VariableUtil to be useful. For example, VariableUtil.isInstanceOf() can tell you if a Java variable is of a particular type.
Since you're not working directly with the Java object instance, to execute any code on the variable you need to send messages to the separate Java process using API provided by Eclipse Java Development Tools (JDT). The format for the required information can be cumbersome and hard to determine, but VariableUtil.runSendMessage() should be used for all evaluations. Take a look at org.eclipse.edt.debug.internal.core.java.variables.MapVariable to see how a complex variable can be restructured.